Difference between revisions of "FEM-WIKI"

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== '''Article Portal''' ==
 
== '''Article Portal''' ==
  
Assessing the burden of disease and risk assessment  
+
* Assessing the burden of disease and risk assessment  
Descriptive data analysis
+
** Descriptive data analysis
Analysis by person characteristics  
+
*** Analysis by person characteristics  
Analysis by place characteristics  
+
**** Analysis by place characteristics  
Choosing an appropriate type of map  
+
**** Choosing an appropriate type of map  
Which indicator to map?  
+
**** Which indicator to map?
+
*** Analysis by time characteristics  
Analysis by time characteristics  
+
* Methods for setting thresholds in time series analysis  
Methods for setting thresholds in time series analysis  
+
* Smoothing techniques for describing time series
Smoothing techniques for describing time series  
+
* Spatial Analysis (Geographical Information Systems)
+
*** Epidemic Intelligence  
Spatial Analysis (Geographical Information Systems)
+
*** Rapid Risk Assessment  
+
* Classifying and Measuring Risk
Epidemic Intelligence  
+
* Identifying Risk
Rapid Risk Assessment  
+
* Stage 0: Preparation for rapid risk assessment
Classifying and Measuring Risk
+
* Stage 1: Collecting event information
Identifying Risk
+
* Stage 2: Systematically collecting information
Stage 0: Preparation for rapid risk assessment
+
* Stage 3: Extracting relevant evidence
Stage 1: Collecting event information
+
* Stage 4: Appraising evidence
Stage 2: Systematically collecting information
+
* Stage 5; Estimating the risk
Stage 3: Extracting relevant evidence
+
* Surveillance - Principles  
Stage 4: Appraising evidence
+
* Criteria for Surveillance  
Stage 5; Estimating the risk
+
* Event-based Surveillance
+
* Indicator-based Surveillance
Surveillance - Principles  
+
* Establishing a Surveillance System
Criteria for Surveillance  
+
* Analysis of Surveillance Data  
Event-based Surveillance
+
* Analysis, Interpretation and Dissemination  
Indicator-based Surveillance
+
* Quality checking
Establishing a Surveillance System
+
* Common errors in surveillance data analysis
Analysis of Surveillance Data  
+
* Evaluation of Surveillance Systems
Analysis, Interpretation and Dissemination  
+
* 10 common errors in surveillance evaluations
Quality checking  
+
* Quality, Governance and Operating Procedures  
+
* Surveillance attributes for evaluation
Common errors in surveillance data analysis
+
* capture-recapture
Evaluation of Surveillance Systems
+
* Sources and Types of Data  
10 common errors in surveillance evaluations
+
* Types of Surveillance System (Active vs Passive)
Quality, Governance and Operating Procedures  
+
* Surveillance System Design and Operation  
Surveillance attributes for evaluation
+
* Uses of Surveillance Data
capture-recapture
+
* Objectives of Surveillance – Inputs and Outputs  
+
* Opportunities and Challenges  
+
* Surveillance or Research?  
Sources and Types of Data  
+
* The Components of Surveillance  
Types of Surveillance System (Active vs Passive)
+
* The Role of Surveillance  
Surveillance System Design and Operation  
+
Field Epidemiology  
+
Combining Studies: Meta-Analysis
+
* Key definitions in infectious diseases epidemiology
Uses of Surveillance Data
+
Measurement in Field Epidemiology
+
Cluster Investigations
Objectives of Surveillance – Inputs and Outputs  
+
* Statistical Methods for Cluster Investigation
Opportunities and Challenges  
+
* Types of Cluster
Surveillance or Research?  
+
*  Getting Measurement Right
The Components of Surveillance  
+
* Measures of association
The Role of Surveillance  
+
Measures of Disease Impact  
+
* Impact numbers  
+
* Measures of disease impact - Further reading  
Field Epidemiology  
+
* Measures of impact among the exposed  
Combining Studies: Meta-Analysis
+
* Measures of impact in the population  
Key definitions in infectious diseases epidemiology
+
Quantifying disease burden  
Measurement in Field Epidemiology
+
Measures of Disease Occurrence  
Cluster Investigations
+
* Attack rates and case fatality  
Statistical Methods for Cluster Investigation
+
* Incidence rate  
Types of Cluster
+
Odds  
+
* Probability  
Getting Measurement Right
+
Prevalence  
Measures of association
+
* Relation between risk and incidence rate  
Measures of Disease Impact  
+
* Risks and Rates  
Impact numbers  
+
Problems with Measurement
Measures of disease impact - Further reading  
+
Bias  
Measures of impact among the exposed  
+
Detection Bias
Measures of impact in the population  
+
Effect Modification and Confounding  
Quantifying disease burden  
+
Confounding in studies  
+
Criteria for confounding  
Measures of Disease Occurrence  
+
Dose Effect  
Attack rates and case fatality  
+
Effect Modification  
Incidence rate  
+
Interaction  
Odds  
+
Residual Confounding  
Probability  
+
Information (Measurement) Bias  
+
Interviewer Bias
Prevalence  
+
Recall Bias
Relation between risk and incidence rate  
+
Reporting Bias
Risks and Rates  
+
Response Bias
+
Preventing bias  
Problems with Measurement
+
Selection Bias  
Bias  
+
Selection bias and case-control studies  
Detection Bias
+
Ascertainment Bias
Effect Modification and Confounding  
+
Diagnostic bias
Confounding in studies  
+
Non-response bias
Criteria for confounding  
+
Referral bias
Dose Effect  
+
Survival bias
Effect Modification  
+
Selection bias and cohort studies  
Interaction  
+
Testing the Tests  
Residual Confounding  
+
Diagnostic tests versus screening tests  
+
Glossary  
Information (Measurement) Bias  
+
Parallel versus Serial testing  
Interviewer Bias
+
Receiver operating curve  
Recall Bias
+
Test Precision
Reporting Bias
+
Test reliability  
Response Bias
+
Test Reproducibility
+
Threshold setting  
Preventing bias  
+
Validity and accuracy  
Selection Bias  
+
Methods in Field Epidemiology
Selection bias and case-control studies  
+
Scientific (evidence base for prevention)
Ascertainment Bias
+
Causal Inference  
Diagnostic bias
+
Causal mechanisms  
Non-response bias
+
Viewpoints for Causality (Bradford Hill)  
Referral bias
+
Types of Study  
Survival bias
+
Analytical Study Designs  
+
Advantages and disadvantages of cohort and case control studies  
Selection bias and cohort studies  
+
Case-control studies  
+
Case-cohort study  
+
Density case control studies  
+
Table measuring risk, rate and odds ratio  
Testing the Tests  
+
Traditional case-control studies  
Diagnostic tests versus screening tests  
+
Choosing a Reference Group  
Glossary  
+
Control Selection  
Parallel versus Serial testing  
+
Developing a control definition  
Receiver operating curve  
+
Special Considerations in Control Selection  
Test Precision
+
Cohort studies  
Test reliability  
+
Measuring incidence rates  
Test Reproducibility
+
Measuring risk  
Threshold setting  
+
Reference group for cohort studies  
Validity and accuracy  
+
Cross-sectional Studies
+
Matching  
+
Advantages and disadvantages of matching  
Methods in Field Epidemiology
+
Principles of matching  
Scientific (evidence base for prevention)
+
Restriction  
Causal Inference  
+
Table format and Analysis  
Causal mechanisms  
+
Measures of effect in various study designs  
Viewpoints for Causality (Bradford Hill)  
+
Non-traditional designs  
+
Case cross over studies  
+
Case to case study design  
Types of Study  
+
* Descriptive Studies  
Analytical Study Designs  
+
Experimental Studies
Advantages and disadvantages of cohort and case control studies  
+
Outbreak Investigations  
Case-control studies  
+
Case definitions for outbreak assessment  
Case-cohort study  
+
Case Definitions
Density case control studies  
+
Defining a Case  
Table measuring risk, rate and odds ratio  
+
Sensitivity and Specificity of a case definition  
Traditional case-control studies  
+
Various Levels of Case Definition  
+
Confirm the outbreak  
Choosing a Reference Group  
+
Types of Outbreak  
Control Selection  
+
Continuing Source
Developing a control definition  
+
Distinguishing Different Sources or Modes of Transmission during an outbreak  
Special Considerations in Control Selection  
+
Identifying Multiple Possible Outbreak Sources  
+
Person to Person
Cohort studies  
+
Point Source
Measuring incidence rates  
+
Refining the estimated point in time of an outbreak source  
Measuring risk  
+
Incubation period, Latent period and Generation time.  
Reference group for cohort studies  
+
Unmasking Outbreak Source through Segmentation  
+
Vector Borne
Cross-sectional Studies
+
Describe the outbreak
Matching  
+
Construction of Epidemic Curves  
Advantages and disadvantages of matching  
+
Diagnostic Applications of the Epidemic Curve  
Principles of matching  
+
Disentangling Complex Data  
Restriction  
+
Use of Epidemic Curves for characterising Outbreak Sources  
Table format and Analysis  
+
Informing Action / Improving Knowledge
+
Additional resources for presenting findings  
Measures of effect in various study designs  
+
Choosing a method of data display  
Non-traditional designs  
+
Communication of findings
Case cross over studies  
+
To professionals
Case to case study design  
+
Definition of an Outbreak Investigation Report  
+
Frequent Problems with writing an Outbreak Investigation Report  
+
Structure of an Outbreak Investigation Report  
Descriptive Studies  
+
Writing an Outbreak Investigation Report  
Experimental Studies
+
Writing style of an Outbreak Investigation Report  
+
SOCO (single over-riding communications objective)
+
To Public and the Media
Outbreak Investigations  
+
Graphs, charts, diagrams  
Case definitions for outbreak assessment  
+
Bar graphs  
Case Definitions
+
Frequency polygons  
Defining a Case  
+
Histograms  
Sensitivity and Specificity of a case definition  
+
Line graphs  
Various Levels of Case Definition  
+
Other types of data display  
+
Pie charts  
+
Interpreting Data
Confirm the outbreak  
+
Maps  
Types of Outbreak  
+
Presenting Data  
Continuing Source
+
Tables  
Distinguishing Different Sources or Modes of Transmission during an outbreak  
+
Types of variables and line listing  
Identifying Multiple Possible Outbreak Sources  
+
Use of computers  
Person to Person
+
Investigations in Special Circumstances
Point Source
+
Disasters and Emergencies
Refining the estimated point in time of an outbreak source  
+
Health care settings
Incubation period, Latent period and Generation time.  
+
Possible Terrorist / Deliberate Event
+
Prisons
Unmasking Outbreak Source through Segmentation  
+
Schools
Vector Borne
+
Outbreak investigations: 10 steps, 10 pitfalls  
+
Outbreak steps : additional points
+
Rationale for Outbreak Investigations
Describe the outbreak
+
Public health response (informing control)
Construction of Epidemic Curves  
+
* The outbreak management team  
Diagnostic Applications of the Epidemic Curve  
+
Formal Risk Assessment
Disentangling Complex Data  
+
Health Economics
Use of Epidemic Curves for characterising Outbreak Sources  
+
Cost-effectiveness
+
Cost-minimisation
+
Cost-utility
Informing Action / Improving Knowledge
+
Measuring the Quality of Healthcare
Additional resources for presenting findings  
+
Sensitivity Analysis
Choosing a method of data display  
+
Screening
Communication of findings
+
Evaluation of Screening
To professionals
+
Measures of Accuracy in Screening
Definition of an Outbreak Investigation Report  
+
Principles of Screening
Frequent Problems with writing an Outbreak Investigation Report  
+
General Communication
Structure of an Outbreak Investigation Report  
+
Aide memoire for oral presentations and visual aids
Writing an Outbreak Investigation Report  
+
Health communication
Writing style of an Outbreak Investigation Report  
+
Crisis communication
SOCO (single over-riding communications objective)
+
Health advocacy
+
Health education
+
Health literacy
To Public and the Media
+
Outbreak communication
+
Risk communication
Graphs, charts, diagrams  
+
Social marketing
Bar graphs  
+
Writing a Study Protocol  
Frequency polygons  
+
Analysing a public health problem  
Histograms  
+
SMART definitions  
Line graphs  
+
Checklist for study protocols
Other types of data display  
+
Data collection instrument
Pie charts  
+
Questionnaire Design  
+
Advantages and Disadvantages of Questionnaires  
Interpreting Data
+
Bias in Questionnaires  
Maps  
+
Hints to Design a Good Questionnaire  
Presenting Data  
+
Questionnaire Layout and Coding  
Tables  
+
Seven Golden Rules to Design Questions  
Types of variables and line listing  
+
Piloting Questionnaires  
Use of computers  
+
Ten Steps to Design a Questionnaire  
+
Types of Questionnaires  
Investigations in Special Circumstances
+
Types of Questions  
Disasters and Emergencies
+
Format of closed questions  
Health care settings
+
Validated questionnaires  
Possible Terrorist / Deliberate Event
+
Writing for Publications
Prisons
+
Checklist for posters  
Schools
+
Scientific paper review form
+
Writing for Stakeholders
Outbreak investigations: 10 steps, 10 pitfalls  
+
Infection control and hospital hygiene
Outbreak steps : additional points
+
Antimicrobial stewardship
Rationale for Outbreak Investigations
+
Healthcare-associated infection prevention and control as a part of patient safety programme
Public health response (informing control)
+
Healthcare-associated infection prevention and control programme
+
Cooperative learning as active learning in adult
The outbreak management team  
+
Education and training of staff
+
Healthcare-associated infections and risk assessment
+
Burden of HAIs
Formal Risk Assessment
+
Main pathogens and resistance
Health Economics
+
Antimicrobial resistance.
Cost-effectiveness
+
Acquired resistance
Cost-minimisation
+
Mechanisms of antimicrobial resistance
Cost-utility
+
Multidrug-resistant organisms (MDRO)
Measuring the Quality of Healthcare
+
Types of HAIs
Sensitivity Analysis
+
CAUTI
+
CLABSI
Screening
+
SSI
Evaluation of Screening
+
VAP
Measures of Accuracy in Screening
+
Infection control interventions
Principles of Screening
+
Cohorting patients and/or staff
+
Contact precautions
+
Developing infection control interventions: isolation
General Communication
+
Environment as a source of healthcare-associated infections
Aide memoire for oral presentations and visual aids
+
Hand hygiene
Health communication
+
Gloves and hand hygiene
Crisis communication
+
Hand hygiene - principles
Health advocacy
+
Five moments for hand hygiene
Health education
+
Hand hygiene before invasive procedures
Health literacy
+
Hand hygiene for patients and visitors
Outbreak communication
+
Indications for hand hygiene
Risk communication
+
Hand hygiene education and promotion
Social marketing
+
Hand hygiene methods
+
Hand hygiene products selection and evaluation
Writing a Study Protocol  
+
Aesthetic preferences
Analysing a public health problem  
+
Evaluation of the microbicidal activities of hand-rub and hand-wash agents
SMART definitions  
+
Pilot testing
+
Product accessibility and cost
Checklist for study protocols
+
Selection and evaluation for specific products
Data collection instrument
+
Microbial flora of the hands
Questionnaire Design  
+
Nails, rings, watches, bracelets
Advantages and Disadvantages of Questionnaires  
+
Skin care
Bias in Questionnaires  
+
Hospital cleaning and decontamination
Hints to Design a Good Questionnaire  
+
Immunization of health care workers
Questionnaire Layout and Coding  
+
Isolation of patients with Clostridium difficile infection (CDI)
Seven Golden Rules to Design Questions  
+
Methods for assessing environmental cleanliness
+
Microbial typing
Piloting Questionnaires  
+
Molecular epidemiology
Ten Steps to Design a Questionnaire  
+
Pre-emptive isolation
Types of Questionnaires  
+
Reprocessing of flexible endoscopes
Types of Questions  
+
Standard precautions
Format of closed questions  
+
The role of the clinical microbiology laboratory in infection prevention and control
+
Clinical role of the microbiology laboratory.
Validated questionnaires  
+
Epidemiological/public health role of the clinical microbiology laboratory
+
Surveillance and investigation of healthcare-associated infections
+
Case definitions of healthcare infections
Writing for Publications
+
HAI case definitions for use in hospitals
Checklist for posters  
+
* Bloodstream Infection
Scientific paper review form
+
* Bone and Joint Infection
+
* Cardiovascular System Infection
Writing for Stakeholders
+
* Catheter-Related Infection
+
* Central Nervous System Infection
Infection control and hospital hygiene
+
* Eye, Ear, Nose or Mouth Infection
Antimicrobial stewardship
+
* Gastrointestinal System Infections
Healthcare-associated infection prevention and control as a part of patient safety programme
+
* Lower Respiratory Tract Infection other than pneumonia
Healthcare-associated infection prevention and control programme
+
* Pneumonia
Cooperative learning as active learning in adult
+
* Reproductive Tract Infections
Education and training of staff
+
* Skin and Soft Tissue Infections
+
* Specific Neonatal Case definitions
Healthcare-associated infections and risk assessment
+
* Surgical Site Infection
Burden of HAIs
+
* Systemic Infections
Main pathogens and resistance
+
* Urinary Tract Infection
Antimicrobial resistance.
+
European surveillance of healthcare-associated infections
Acquired resistance
+
ECDC point prevalence survey of healthcare-associated infections and antimicrobial use in acute care hospitals
Mechanisms of antimicrobial resistance
+
ECDC “Point prevalence survey of healthcare associated infections and antimicrobial use in European acute care hospitals” protocol
+
* ECDC “Point prevalence survey of healthcare associated infections and antimicrobial use in European acute care hospitals”, definition of healthcare-associated infection
Multidrug-resistant organisms (MDRO)
+
* ECDC PPS - antimicrobial use definition
+
* ECDC PPS - inclusion/exclusion criteria
Types of HAIs
+
* ECDC point prevalence survey of healthcare-associated infections and antimicrobial use in long term care facilities
CAUTI
+
* ECDC surveillance of Surgical Site Infections
CLABSI
+
HAI Surveillance at the EU level - importance of international networks
SSI
+
* ECDC Programme on antimicrobial resistance and healthcare-associated infections
VAP
+
* European Antimicrobial Resistance Surveillance Network (EARS-Net)
+
* European Surveillance of Antimicrobial Consumption Network (ESAC-Net)
+
* Healthcare-Associated Infections Network (HAI-Net)
Infection control interventions
+
* Surveillance of Clostridium difficile infections
Cohorting patients and/or staff
+
* Surveillance of HAIs in intensive care units
Contact precautions
+
* The European Surveillance System (TESSy)
Developing infection control interventions: isolation
+
Surveillance of healthcare-associated infections - definition
Environment as a source of healthcare-associated infections
+
* Surveillance methodologies for healthcare associated infections
Hand hygiene
+
Surveillance of healthcare-associated infections - other approaches
Gloves and hand hygiene
+
* Surveillance for MV Patients in the ICU
Hand hygiene - principles
+
*  Introduction to Public Health and basic concepts  
Five moments for hand hygiene
+
Public Health Informatics  
Hand hygiene before invasive procedures
+
* Apps for epidemiologists
Hand hygiene for patients and visitors
+
Data Capture Systems
Indications for hand hygiene
+
* Electronic Data Transfer
+
* Online Reporting
Hand hygiene education and promotion
+
* Web-crawling Applications
Hand hygiene methods
+
Health Informatics Standards – general introduction  
Hand hygiene products selection and evaluation
+
* Health Informatics Standards - Health Information Systems and Processes
Aesthetic preferences
+
* Health Informatics Standards - Standard Content
Evaluation of the microbicidal activities of hand-rub and hand-wash agents
+
* Software for epidemiologists  
Pilot testing
+
* Weblinks for epidemiologists
Product accessibility and cost
+
Public Health Interventions  
Selection and evaluation for specific products
+
* Contact tracing
+
* Host  
Microbial flora of the hands
+
Prevention  
Nails, rings, watches, bracelets
+
* Hygiene and Sanitation
Skin care
+
Primary prevention  
+
Vaccination
Hospital cleaning and decontamination
+
* Herd immunity
Immunization of health care workers
+
* Measuring protection
Isolation of patients with Clostridium difficile infection (CDI)
+
* Secondary prevention
Methods for assessing environmental cleanliness
+
* Tertiary prevention
Microbial typing
+
* Reservoir for infectious agents  
Molecular epidemiology
+
* Source of infection  
Pre-emptive isolation
+
* Transmission routes  
Reprocessing of flexible endoscopes
+
Public Health Law  
Standard precautions
+
* Brief history of International Communicable Disease Law  
The role of the clinical microbiology laboratory in infection prevention and control
+
EU Public Health Legislation  
Clinical role of the microbiology laboratory.
+
Decision 1082/2013/EU: Serious cross border health threat
Epidemiological/public health role of the clinical microbiology laboratory
+
* Some key recitals under 1082
+
* EU Food Safety Legislation
+
* EU Legislation for Communicable Diseases Surveillance
Surveillance and investigation of healthcare-associated infections
+
International Health Regulations 2005 edition
Case definitions of healthcare infections
+
* Applying Epidemiology for the International Health Regulations.  
HAI case definitions for use in hospitals
+
Public Health Microbiology
Bloodstream Infection
+
Applied Immunology
Bone and Joint Infection
+
* Antibodies
Cardiovascular System Infection
+
* Antigen presenting cells (APC)  
Catheter-Related Infection
+
* Antigens (Ag)
Central Nervous System Infection
+
How pathogens try to trick our defenses
Eye, Ear, Nose or Mouth Infection
+
* Helminthic mechanisms of immune evasion
Gastrointestinal System Infections
+
* Mechanism of infectious disease
Lower Respiratory Tract Infection other than pneumonia
+
* What determines our susceptibility to infections?
Pneumonia
+
* Practical Aspects of Specimen Collection and Shipment
Reproductive Tract Infections
+
The Role of Microbiology
Skin and Soft Tissue Infections
+
* Bioinformatics
Specific Neonatal Case definitions
+
* Expert Advice
Surgical Site Infection
+
* Laboratory Support
Systemic Infections
+
* Types of Microorganisms
Urinary Tract Infection
+
* Public Health Programs  
+
Statistical Concepts
+
Models
European surveillance of healthcare-associated infections
+
Logistic Regression  
ECDC point prevalence survey of healthcare-associated infections and antimicrobial use in acute care hospitals
+
* Estimating Odds Ratios in the presence of interaction  
ECDC “Point prevalence survey of healthcare associated infections and antimicrobial use in European acute care hospitals” protocol
+
* Fitting logistic regression models  
ECDC “Point prevalence survey of healthcare associated infections and antimicrobial use in European acute care hospitals”, definition of healthcare-associated infection
+
* Interpreting model coefficients  
ECDC PPS - antimicrobial use definition
+
* Linear models  
ECDC PPS - inclusion/exclusion criteria
+
* Model building strategies  
+
* The logistic model  
+
Stratified Analysis  
ECDC point prevalence survey of healthcare-associated infections and antimicrobial use in long term care facilities
+
* The Mantel Haenszel Method  
ECDC surveillance of Surgical Site Infections
+
* Power and Sample Size
HAI Surveillance at the EU level - importance of international networks
+
* Presenting Statistics
ECDC Programme on antimicrobial resistance and healthcare-associated infections
+
Sampling  
European Antimicrobial Resistance Surveillance Network (EARS-Net)
+
* Concepts in sampling  
European Surveillance of Antimicrobial Consumption Network (ESAC-Net)
+
Statistical Tests
Healthcare-Associated Infections Network (HAI-Net)
+
Significance and Confidence  
+
* Confidence Intervals  
Surveillance of Clostridium difficile infections
+
* Significant probability to be different from the expected  
Surveillance of HAIs in intensive care units
+
* The idea of Statistical Inference
The European Surveillance System (TESSy)
 
 
Surveillance of healthcare-associated infections - definition
 
Surveillance methodologies for healthcare associated infections
 
 
Surveillance of healthcare-associated infections - other approaches
 
Surveillance for MV Patients in the ICU
 
 
 
 
Introduction to Public Health and basic concepts  
 
Public Health Informatics  
 
Apps for epidemiologists
 
Data Capture Systems
 
Electronic Data Transfer
 
Online Reporting
 
Web-crawling Applications
 
 
Health Informatics Standards – general introduction  
 
Health Informatics Standards - Health Information Systems and Processes
 
Health Informatics Standards - Standard Content
 
 
Software for epidemiologists  
 
Weblinks for epidemiologists
 
 
Public Health Interventions  
 
Contact tracing
 
Host  
 
Prevention  
 
Hygiene and Sanitation
 
Primary prevention  
 
Vaccination
 
Herd immunity
 
Measuring protection
 
 
 
Secondary prevention
 
Tertiary prevention
 
 
Reservoir for infectious agents  
 
Source of infection  
 
Transmission routes  
 
 
Public Health Law  
 
Brief history of International Communicable Disease Law  
 
EU Public Health Legislation  
 
Decision 1082/2013/EU: Serious cross border health threat
 
Some key recitals under 1082
 
 
EU Food Safety Legislation
 
EU Legislation for Communicable Diseases Surveillance
 
 
International Health Regulations 2005 edition
 
Applying Epidemiology for the International Health Regulations.  
 
 
 
Public Health Microbiology
 
Applied Immunology
 
Antibodies
 
Antigen presenting cells (APC)  
 
Antigens (Ag)
 
How pathogens try to trick our defenses
 
Helminthic mechanisms of immune evasion
 
 
Mechanism of infectious disease
 
What determines our susceptibility to infections?
 
 
Practical Aspects of Specimen Collection and Shipment
 
The Role of Microbiology
 
Bioinformatics
 
Expert Advice
 
Laboratory Support
 
 
Types of Microorganisms
 
 
Public Health Programs  
 
 
Statistical Concepts
 
Models
 
Logistic Regression  
 
Estimating Odds Ratios in the presence of interaction  
 
Fitting logistic regression models  
 
Interpreting model coefficients  
 
Linear models  
 
Model building strategies  
 
The logistic model  
 
 
Stratified Analysis  
 
The Mantel Haenszel Method  
 
 
 
Power and Sample Size
 
Presenting Statistics
 
Sampling  
 
Concepts in sampling  
 
 
Statistical Tests
 
Significance and Confidence  
 
Confidence Intervals  
 
Significant probability to be different from the expected  
 
The idea of Statistical Inference
 

Revision as of 20:02, 17 December 2022

Welcome to FEMWIKI

The Field Epidemiology Manual was originally developed by the ECDC to support the European Programme for Intervention Epidemiology Training (EPIET). Trainers, supervisors, scientific coordinators, and facilitators created draft chapters using the lectures they delivered during the EPIET introductory course. The philosophy of sharing and building knowledge (in particular training materials) led to the creation of a collaborative information space for the epidemiological training community - The FEM Wiki.

Eventually, the ECDC decommissioned the FEM Wiki and archived the last version as a PDF. Since FEM Wiki content was developed under Creative Commons, the Dutch Public Health Learning Support Company Transmissible decided to reinstall the Field Epidemiology manual as it was intended: a professional collaborative platform.

The aim of the FEM Wiki is to create a library of training materials for field epidemiology training programs.


Article Portal

  • Assessing the burden of disease and risk assessment
    • Descriptive data analysis
      • Analysis by person characteristics
        • Analysis by place characteristics
        • Choosing an appropriate type of map
        • Which indicator to map?
      • Analysis by time characteristics
  • Methods for setting thresholds in time series analysis
  • Smoothing techniques for describing time series
  • Spatial Analysis (Geographical Information Systems)
      • Epidemic Intelligence
      • Rapid Risk Assessment
  • Classifying and Measuring Risk
  • Identifying Risk
  • Stage 0: Preparation for rapid risk assessment
  • Stage 1: Collecting event information
  • Stage 2: Systematically collecting information
  • Stage 3: Extracting relevant evidence
  • Stage 4: Appraising evidence
  • Stage 5; Estimating the risk
  • Surveillance - Principles
  • Criteria for Surveillance
  • Event-based Surveillance
  • Indicator-based Surveillance
  • Establishing a Surveillance System
  • Analysis of Surveillance Data
  • Analysis, Interpretation and Dissemination
  • Quality checking
  • Common errors in surveillance data analysis
  • Evaluation of Surveillance Systems
  • 10 common errors in surveillance evaluations
  • Quality, Governance and Operating Procedures
  • Surveillance attributes for evaluation
  • capture-recapture
  • Sources and Types of Data
  • Types of Surveillance System (Active vs Passive)
  • Surveillance System Design and Operation
  • Uses of Surveillance Data
  • Objectives of Surveillance – Inputs and Outputs
  • Opportunities and Challenges
  • Surveillance or Research?
  • The Components of Surveillance
  • The Role of Surveillance
  • Field Epidemiology
  • Combining Studies: Meta-Analysis
  • Key definitions in infectious diseases epidemiology
  • Measurement in Field Epidemiology
  • Cluster Investigations
  • Statistical Methods for Cluster Investigation
  • Types of Cluster
  • Getting Measurement Right
  • Measures of association
  • Measures of Disease Impact
  • Impact numbers
  • Measures of disease impact - Further reading
  • Measures of impact among the exposed
  • Measures of impact in the population
  • Quantifying disease burden
  • Measures of Disease Occurrence
  • Attack rates and case fatality
  • Incidence rate
  • Odds
  • Probability
  • Prevalence
  • Relation between risk and incidence rate
  • Risks and Rates
  • Problems with Measurement
  • Bias
  • Detection Bias
  • Effect Modification and Confounding
  • Confounding in studies
  • Criteria for confounding
  • Dose Effect
  • Effect Modification
  • Interaction
  • Residual Confounding
  • Information (Measurement) Bias
  • Interviewer Bias
  • Recall Bias
  • Reporting Bias
  • Response Bias
  • Preventing bias
  • Selection Bias
  • Selection bias and case-control studies
  • Ascertainment Bias
  • Diagnostic bias
  • Non-response bias
  • Referral bias
  • Survival bias
  • Selection bias and cohort studies
  • Testing the Tests
  • Diagnostic tests versus screening tests
  • Glossary
  • Parallel versus Serial testing
  • Receiver operating curve
  • Test Precision
  • Test reliability
  • Test Reproducibility
  • Threshold setting
  • Validity and accuracy
  • Methods in Field Epidemiology
  • Scientific (evidence base for prevention)
  • Causal Inference
  • Causal mechanisms
  • Viewpoints for Causality (Bradford Hill)
  • Types of Study
  • Analytical Study Designs
  • Advantages and disadvantages of cohort and case control studies
  • Case-control studies
  • Case-cohort study
  • Density case control studies
  • Table measuring risk, rate and odds ratio
  • Traditional case-control studies
  • Choosing a Reference Group
  • Control Selection
  • Developing a control definition
  • Special Considerations in Control Selection
  • Cohort studies
  • Measuring incidence rates
  • Measuring risk
  • Reference group for cohort studies
  • Cross-sectional Studies
  • Matching
  • Advantages and disadvantages of matching
  • Principles of matching
  • Restriction
  • Table format and Analysis
  • Measures of effect in various study designs
  • Non-traditional designs
  • Case cross over studies
  • Case to case study design
  • Descriptive Studies
  • Experimental Studies
  • Outbreak Investigations
  • Case definitions for outbreak assessment
  • Case Definitions
  • Defining a Case
  • Sensitivity and Specificity of a case definition
  • Various Levels of Case Definition
  • Confirm the outbreak
  • Types of Outbreak
  • Continuing Source
  • Distinguishing Different Sources or Modes of Transmission during an outbreak
  • Identifying Multiple Possible Outbreak Sources
  • Person to Person
  • Point Source
  • Refining the estimated point in time of an outbreak source
  • Incubation period, Latent period and Generation time.
  • Unmasking Outbreak Source through Segmentation
  • Vector Borne
  • Describe the outbreak
  • Construction of Epidemic Curves
  • Diagnostic Applications of the Epidemic Curve
  • Disentangling Complex Data
  • Use of Epidemic Curves for characterising Outbreak Sources
  • Informing Action / Improving Knowledge
  • Additional resources for presenting findings
  • Choosing a method of data display
  • Communication of findings
  • To professionals
  • Definition of an Outbreak Investigation Report
  • Frequent Problems with writing an Outbreak Investigation Report
  • Structure of an Outbreak Investigation Report
  • Writing an Outbreak Investigation Report
  • Writing style of an Outbreak Investigation Report
  • SOCO (single over-riding communications objective)
  • To Public and the Media
  • Graphs, charts, diagrams
  • Bar graphs
  • Frequency polygons
  • Histograms
  • Line graphs
  • Other types of data display
  • Pie charts
  • Interpreting Data
  • Maps
  • Presenting Data
  • Tables
  • Types of variables and line listing
  • Use of computers
  • Investigations in Special Circumstances
  • Disasters and Emergencies
  • Health care settings
  • Possible Terrorist / Deliberate Event
  • Prisons
  • Schools
  • Outbreak investigations: 10 steps, 10 pitfalls
  • Outbreak steps : additional points
  • Rationale for Outbreak Investigations
  • Public health response (informing control)
  • The outbreak management team
  • Formal Risk Assessment
  • Health Economics
  • Cost-effectiveness
  • Cost-minimisation
  • Cost-utility
  • Measuring the Quality of Healthcare
  • Sensitivity Analysis
  • Screening
  • Evaluation of Screening
  • Measures of Accuracy in Screening
  • Principles of Screening
  • General Communication
  • Aide memoire for oral presentations and visual aids
  • Health communication
  • Crisis communication
  • Health advocacy
  • Health education
  • Health literacy
  • Outbreak communication
  • Risk communication
  • Social marketing
  • Writing a Study Protocol
  • Analysing a public health problem
  • SMART definitions
  • Checklist for study protocols
  • Data collection instrument
  • Questionnaire Design
  • Advantages and Disadvantages of Questionnaires
  • Bias in Questionnaires
  • Hints to Design a Good Questionnaire
  • Questionnaire Layout and Coding
  • Seven Golden Rules to Design Questions
  • Piloting Questionnaires
  • Ten Steps to Design a Questionnaire
  • Types of Questionnaires
  • Types of Questions
  • Format of closed questions
  • Validated questionnaires
  • Writing for Publications
  • Checklist for posters
  • Scientific paper review form
  • Writing for Stakeholders
  • Infection control and hospital hygiene
  • Antimicrobial stewardship
  • Healthcare-associated infection prevention and control as a part of patient safety programme
  • Healthcare-associated infection prevention and control programme
  • Cooperative learning as active learning in adult
  • Education and training of staff
  • Healthcare-associated infections and risk assessment
  • Burden of HAIs
  • Main pathogens and resistance
  • Antimicrobial resistance.
  • Acquired resistance
  • Mechanisms of antimicrobial resistance
  • Multidrug-resistant organisms (MDRO)
  • Types of HAIs
  • CAUTI
  • CLABSI
  • SSI
  • VAP
  • Infection control interventions
  • Cohorting patients and/or staff
  • Contact precautions
  • Developing infection control interventions: isolation
  • Environment as a source of healthcare-associated infections
  • Hand hygiene
  • Gloves and hand hygiene
  • Hand hygiene - principles
  • Five moments for hand hygiene
  • Hand hygiene before invasive procedures
  • Hand hygiene for patients and visitors
  • Indications for hand hygiene
  • Hand hygiene education and promotion
  • Hand hygiene methods
  • Hand hygiene products selection and evaluation
  • Aesthetic preferences
  • Evaluation of the microbicidal activities of hand-rub and hand-wash agents
  • Pilot testing
  • Product accessibility and cost
  • Selection and evaluation for specific products
  • Microbial flora of the hands
  • Nails, rings, watches, bracelets
  • Skin care
  • Hospital cleaning and decontamination
  • Immunization of health care workers
  • Isolation of patients with Clostridium difficile infection (CDI)
  • Methods for assessing environmental cleanliness
  • Microbial typing
  • Molecular epidemiology
  • Pre-emptive isolation
  • Reprocessing of flexible endoscopes
  • Standard precautions
  • The role of the clinical microbiology laboratory in infection prevention and control
  • Clinical role of the microbiology laboratory.
  • Epidemiological/public health role of the clinical microbiology laboratory
  • Surveillance and investigation of healthcare-associated infections
  • Case definitions of healthcare infections
  • HAI case definitions for use in hospitals
  • Bloodstream Infection
  • Bone and Joint Infection
  • Cardiovascular System Infection
  • Catheter-Related Infection
  • Central Nervous System Infection
  • Eye, Ear, Nose or Mouth Infection
  • Gastrointestinal System Infections
  • Lower Respiratory Tract Infection other than pneumonia
  • Pneumonia
  • Reproductive Tract Infections
  • Skin and Soft Tissue Infections
  • Specific Neonatal Case definitions
  • Surgical Site Infection
  • Systemic Infections
  • Urinary Tract Infection
  • European surveillance of healthcare-associated infections
  • ECDC point prevalence survey of healthcare-associated infections and antimicrobial use in acute care hospitals
  • ECDC “Point prevalence survey of healthcare associated infections and antimicrobial use in European acute care hospitals” protocol
  • ECDC “Point prevalence survey of healthcare associated infections and antimicrobial use in European acute care hospitals”, definition of healthcare-associated infection
  • ECDC PPS - antimicrobial use definition
  • ECDC PPS - inclusion/exclusion criteria
  • ECDC point prevalence survey of healthcare-associated infections and antimicrobial use in long term care facilities
  • ECDC surveillance of Surgical Site Infections
  • HAI Surveillance at the EU level - importance of international networks
  • ECDC Programme on antimicrobial resistance and healthcare-associated infections
  • European Antimicrobial Resistance Surveillance Network (EARS-Net)
  • European Surveillance of Antimicrobial Consumption Network (ESAC-Net)
  • Healthcare-Associated Infections Network (HAI-Net)
  • Surveillance of Clostridium difficile infections
  • Surveillance of HAIs in intensive care units
  • The European Surveillance System (TESSy)
  • Surveillance of healthcare-associated infections - definition
  • Surveillance methodologies for healthcare associated infections
  • Surveillance of healthcare-associated infections - other approaches
  • Surveillance for MV Patients in the ICU
  • Introduction to Public Health and basic concepts
  • Public Health Informatics
  • Apps for epidemiologists
  • Data Capture Systems
  • Electronic Data Transfer
  • Online Reporting
  • Web-crawling Applications
  • Health Informatics Standards – general introduction
  • Health Informatics Standards - Health Information Systems and Processes
  • Health Informatics Standards - Standard Content
  • Software for epidemiologists
  • Weblinks for epidemiologists
  • Public Health Interventions
  • Contact tracing
  • Host
  • Prevention
  • Hygiene and Sanitation
  • Primary prevention
  • Vaccination
  • Herd immunity
  • Measuring protection
  • Secondary prevention
  • Tertiary prevention
  • Reservoir for infectious agents
  • Source of infection
  • Transmission routes
  • Public Health Law
  • Brief history of International Communicable Disease Law
  • EU Public Health Legislation
  • Decision 1082/2013/EU: Serious cross border health threat
  • Some key recitals under 1082
  • EU Food Safety Legislation
  • EU Legislation for Communicable Diseases Surveillance
  • International Health Regulations 2005 edition
  • Applying Epidemiology for the International Health Regulations.
  • Public Health Microbiology
  • Applied Immunology
  • Antibodies
  • Antigen presenting cells (APC)
  • Antigens (Ag)
  • How pathogens try to trick our defenses
  • Helminthic mechanisms of immune evasion
  • Mechanism of infectious disease
  • What determines our susceptibility to infections?
  • Practical Aspects of Specimen Collection and Shipment
  • The Role of Microbiology
  • Bioinformatics
  • Expert Advice
  • Laboratory Support
  • Types of Microorganisms
  • Public Health Programs
  • Statistical Concepts
  • Models
  • Logistic Regression
  • Estimating Odds Ratios in the presence of interaction
  • Fitting logistic regression models
  • Interpreting model coefficients
  • Linear models
  • Model building strategies
  • The logistic model
  • Stratified Analysis
  • The Mantel Haenszel Method
  • Power and Sample Size
  • Presenting Statistics
  • Sampling
  • Concepts in sampling
  • Statistical Tests
  • Significance and Confidence
  • Confidence Intervals
  • Significant probability to be different from the expected
  • The idea of Statistical Inference

Contributors